Circa for RNAseq: Differential expression circos plot

Ғылым және технология

Using Circa to make a circos plot of differential gene expression results from DESeq2.
* 0:00 Loading data into Circa
* 3:13 Fixing problematic data using Google Sheets
* 9:47 Styling the plot with neon color scheme
Buy Circa: omgenomics.com/circa
Data from this paper: www.mdpi.com/2072-6694/13/17/... - thank you Vikas!

Пікірлер: 12

  • @serychristianrenaud
    @serychristianrenaud Жыл бұрын

    Thank

  • @shiyiyin3403
    @shiyiyin3403 Жыл бұрын

    Nice work, i think if there is a skinny version for a free trial to test if this is the right product for users, the trial could help with sales

  • @OMGenomics
    @OMGenomics Жыл бұрын

    Circa is for sale here: omgenomics.com/circa

  • @kassawall46
    @kassawall464 ай бұрын

    Is there a trial version for the circa software? I don´t know if thsi siftware fits to my data, som I would love to have a trial version. If it fits, I would buy it definitley.

  • @antoniobaeza4580
    @antoniobaeza4580 Жыл бұрын

    Looks like a nice software. Any chance you can provide a price waiver for educational purposes?

  • @OMGenomics

    @OMGenomics

    Жыл бұрын

    Circa is already half price for academics/nonprofits/government, which is actually 94% of users. There are some great free options out there, e.g. multiple R packages and the original circos itself. These other tools and libraries have a higher learning curve than Circa but can be great options depending on your budget.

  • @Stop-and-listen
    @Stop-and-listen Жыл бұрын

    Could you please provide links to the software?

  • @OMGenomics

    @OMGenomics

    Жыл бұрын

    Circa is here: omgenomics.com/circa

  • @Stop-and-listen
    @Stop-and-listen Жыл бұрын

    Is this a Shinny app?

  • @OMGenomics

    @OMGenomics

    Жыл бұрын

    Nope! It's a desktop app built with Electron, with visualization in D3.js.

  • @roxaneserine203
    @roxaneserine2032 ай бұрын

    what is the purpose of this plot? how you can use this plot to come up with solutions for a disease?

  • @OMGenomics

    @OMGenomics

    2 ай бұрын

    Data viz in general (and this type of plot in particular) can be used to communicate results with other scientists or as part of your own data exploration to find results worth sharing in the first place. I made my own first circos plot because I was looking at large structural variants like inter-chromosomal translocations and wanted to see an overview of where the translocations were happening across the genome. It's really good for whole-genome views of data. A plot is never going to single-handedly come up with solutions for a disease though, it's just part of the process of us as scientists understanding what the data is telling us :)

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