Пікірлер

• 
  @m.rezaandalibi337322 сағат бұрын

  Thanks for sharing this tutorial. Just a note for those who may come across the same issue, I had to install CUDA toolkit using sudo apt install nvidia-cuda-toolkit to get my installation right. The original method presented in the video didn't work for me 🙂

• 
  @asm97493 күн бұрын

  Hello Sir, what is the configuration of the system to rum gromacs?

• 
  @tishadash94396 күн бұрын

  Thank you 👍🏻

• 
  @pankajbarfal478411 күн бұрын

  thank you very much sir, very informative.

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  @estervarnavsky296311 күн бұрын

  thank you from israel!

• 
  @khansarahman146512 күн бұрын

  Useful video

• 
  @beyiokubabatunde461016 күн бұрын

  Good job, good explanation.Weldone

• 
  @daljeetkaur969316 күн бұрын

  Thanks a lot Sir Very helpful video

• 
  @susmitaroy389917 күн бұрын

  Sir, Is this tutorial valid for Ubuntu OS, which is a Virtual Box?

• 
  @Ashrafwazirkhan20 күн бұрын

  Need videos on free energy calculations gmx-mmpbsa

• 
  @Ashrafwazirkhan20 күн бұрын

  Need videos on free energy calculations gmx-mmpbsa

• 
  @Ashrafwazirkhan20 күн бұрын

  Need videos on free energy calculations gmx-mmpbsa

• 
  @Ashrafwazirkhan20 күн бұрын

  Need videos on free energy calculations mm-mmpbsa

• 
  @peiqiao962122 күн бұрын

  Hello, Thanks for this tutorial. I followed the steps until I try to compile gromacs-2024.2. The program reported error during cmake. It reads like this: 'CMake Error at /usr/share/cmake-3.28/Modules/CMakeDetermineCUDACompiler .cmake:270 (message): Failed to detect a default CUDA architecture.' could you please tell me how to fix it?

• 
  @kankipatitejashyam211623 күн бұрын

  Hello there, can you please tell me your system (PC/LAPTOP) specifications Thank you

• 
  @quickbiology515924 күн бұрын

  sir can you pls help with this log in process they are saying you need to purchase an item

• 
  @hridoy.00724 күн бұрын

  Good work ❤️ Thank you so much 😊

• 
  @Snehakaashid24 күн бұрын

  I got an error sir my cordinate file (box_sol.gro 23286) and topology file number( 21270 ) Did not match. Kindly help me . I follow your vedio since episode 8 till now it work smoothly but now this error arises

• 
  @victoriaogor452527 күн бұрын

  Very useful sir, thanks.

• 
  @varshinikore301129 күн бұрын

  2619 atoms are not part of any of the T-coupling groups I am getting same error every time plzzz suggest what to do

• 
  @abhishekdas6874Ай бұрын

  Best <3

• 
  @anjalighosh13Ай бұрын

  Sir forward primer always binds with anti sense strand and reverse primer binds with sense strand.

• 
  @thotavinaykumar285Ай бұрын

  Please sir, can you please do this mac os!

• 
  @PraneelSinglaАй бұрын

  Thank you for the tutorial! Very well explained and worked properly.

• 
  @fazalkarim5528Ай бұрын

  Thanks for your very informative video but I am getting Cmake error configuration file unable to detect cuda compiler Although I have installed cuda toolkit

• 
  @sivaramansharadat3430Ай бұрын

  Can I run gromacs md simulations in windows

• 
  @carolinemaina4062Ай бұрын

  You are a lifesaver. Everything works perfectly. Thank you so much for such a detailed presentation

• 
  @monahussain1938Ай бұрын

  sir am always trying to create ligand topologies from swissparam but there is always an error although i follow all the steps

• 
  @Samiya-ni3fnАй бұрын

  Your explanation is mind-blowing 🎉 Plz make a vedio on SMART and TBtool

• 
  @hlatywayotinotenda3895Ай бұрын

  from the tutorial, i am failing to understand how the protein-ligand interaction in Pose1 is maintained. Does it differ, lets say i have used pose3 or i have downloaded the ligand in sdf format and just converted it to mol2 format using open babel. May you please help me.

• 
  @user-xr2kt7qd6nАй бұрын

  Hi Why is there no alignment?

• 
  @ES-yd1zeАй бұрын

  Hi Dear Vina linux pl is installed with vina or it is different ?

• 
  @nitinpaathshala5626Ай бұрын

  My Grace program does not open when entered xmgrace command

• 
  @eyeaball5436Ай бұрын

  Thank you so much for this explanation, I will be using this software soon!

• 
  @dilarashakirova3600Ай бұрын

  Thank you so much!

• 
  @JellaMarutiАй бұрын

  Thank you so much for the super awesome tutorial. A quick question, do we have to run the equilibration run for NVT and NPT for exactl same time as that of md run (for eg 25 ns for all, NVT, NPT and md run)? Please let me know, thanks a lot again for all the hard work.

• 
  @johannabangoy48132 ай бұрын

  How did you get the sequence of the reference strains?

• 
  @karukuvelrajaraja61012 ай бұрын

  Thank you so much even very know persons can't teach me this past 2 months lot of errors and mistakes finally I saw your video truly I can't got any errors successfully I done this thank you very much sir

• 
  @niveditasingh58372 ай бұрын

  Thank you so much sir. This video has been fundamental for me to learn MD simulation. Please upload video to calculate cross correlation matrix also. It is imperative for may work

• 
  @PujaBK-qt4cx2 ай бұрын

  downloading requires purchase. how to go about it

• 
  @JQ-rf1xb2 ай бұрын

  Thank you for your wonderful explanation, it helped me tremendously😁

• 
  @manideepgoud71222 ай бұрын

  Sir, can you explain how to run hole2 programme for protein pore calculation

• 
  @DrMubashirAziz_official2 ай бұрын

  Thanku sir for great tutorial..can you please share this package via drive link??

• 
  @ipinlojunureni87802 ай бұрын

  Hi Dr. Thank you for the wonderful lecture When converting to a topology file, I am getting an error that Residue 'BRL' is not found in residue topology databases. How can I solve this issue sir?

• 
  @nimraimtiaz9822 ай бұрын

  Thanks a lot...I could find only this video very useful...❤

• 
  @NurArshad2 ай бұрын

  Hi, I have run an MD simulations for 100ns on protein-protein complex, and I am currently trying to analyse the results. However, while I was running the simulations, there was a power cut-off on my PC and in order to continue the simulations, I extended the running time for another 20ns. unfortunately, when I tried to generate the RMSD plot, I noticed that the plot did not start from 0ns but from around 90ns, and the value of the RMSD just shoot to around 2.9-3.0nm. I also had another simulations run for 1ns, and the graph actually starts from 0ns point. So, I actually noticed that I have few parts of the xtc files and planned to combine them so I get to generate a continuous RMSD plot from 0ns to 120ns using this command gmx trjcat -f *.xtc -o fixed.xtc but I have been getting errors. Would you suggest any advice for me? Thank you in advanced.

• 
  @user-wv8yq5xm1h2 ай бұрын

  Sir im finding this error CMake Error at cmake/gmxManageCuda.cmake:116 (enable_language): No CMAKE_CUDA_COMPILER could be found. Tell CMake where to find the compiler by setting either the environment variable "CUDACXX" or the CMake cache entry CMAKE_CUDA_COMPILER to the full path to the compiler, or to the compiler name if it is in the PATH. Call Stack (most recent call first): CMakeLists.txt:699 (include)

• 
  @javierenriquelombanaespino6225Ай бұрын

  Did you fix your error?

• 
  @prashantmore79123 ай бұрын

  Sir, What is the reason that in Maestro, job is died automatically?

• 
  @Zahid.Mumtaz3 ай бұрын

  Please guide me, I am stuck as my consensus sequence is coming in this form. what to do? Example >Consensus -------------------------------------------CTGCCAGTAAGACAGGGATAACGCCCGGAAAC-GAAGCAAATAACGCATA--AACCACTCCGCCAGGGGAG-ACGATCGAAAGACGGAAACGCAAAGCAATT---GACGGGCCCCCGCA-CAAGAGCTAGAGCATGAGGTA-AAGGCGAACCAACGCAAAGAACCATACCAGACCTG-GACA-TCATCGGACA-ACT----CT-AGACCAAAAAACAAGGCTCAACCC-GGAGGGTAAGCGGAAACTCGCCAGCCCGAAA-CACCCAGATAATCC-------------------

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  @endalineaniefuna93043 ай бұрын

  Thanks a lot!