How to correctly analyze raw sequence files of bacterial 16s rRNA partial gene sequence

Hi,
I am Dr. Dweipayan Goswami,
Welcome to my KZread channel "Learn at ease"
I will be uploading animated videos related to biochemistry for the Under Graduates and Graduates purely based on the information form the traditional text books
I will also upload videos in the subjects of Microbiology, Biotechnology, Immunology etc.
If you like the concept, please subscribe to my channel 'LEARN AT EASE'

Пікірлер: 20

  • @pankajbarfal4784
    @pankajbarfal478411 күн бұрын

    thank you very much sir, very informative.

  • @victoriaogor4525
    @victoriaogor452527 күн бұрын

    Very useful sir, thanks.

  • @user-wv7dn6ux5p
    @user-wv7dn6ux5p11 ай бұрын

    Thank you so much for making this fantastic video. I have watched 10 videos by after this video all doubts become clear. if it is possible, please make some video on shotgun whole genome sequencing of bacteria.

  • @drmrunalinibr2869
    @drmrunalinibr2869 Жыл бұрын

    Extremely good explanation

  • @DweipayanG

    @DweipayanG

    Жыл бұрын

    Thank you !!

  • @endalineaniefuna9304
    @endalineaniefuna93043 ай бұрын

    Thanks a lot!

  • @repallyayyanna7849
    @repallyayyanna784910 ай бұрын

    thanks, its useful video

  • @bjjjallowjallow7844
    @bjjjallowjallow784410 ай бұрын

    how did you get the chromatogram in bioedit. i am only getting the sequence in bioedit and did not know how you opened both the bioedit and chromatogram to delete uncorrect nucleotides.

  • @anjalighosh13
    @anjalighosh13Ай бұрын

    Sir forward primer always binds with anti sense strand and reverse primer binds with sense strand.

  • @mekpath5818
    @mekpath5818 Жыл бұрын

    Thank you so much

  • @blessy945
    @blessy9459 ай бұрын

    sir the lesson is useful. can u also make a video on "how to align our trimmed consensus 16s rRNA sequence with BLAST hit sequences, including some whole genome sequences hits in MEGA software". Thank you

  • @kristinacasandrapava9252
    @kristinacasandrapava92525 ай бұрын

    Hi, what do you do when there are gaps between the sequences after aligning them?

  • @noorlutphyali7495
    @noorlutphyali74956 ай бұрын

    The quary length in this example is 403 , i used the same step and i get 665, please i want to ask is this query length acceptable to be be submitted to NCBI to register the bacteria ?

  • @thehippocampus9130
    @thehippocampus91304 ай бұрын

    How about for 4peaks?

  • @khanhammaadabdulwahab2000
    @khanhammaadabdulwahab20004 ай бұрын

    From where we can download forward and reverse sequences?

  • @user-wv7dn6ux5p
    @user-wv7dn6ux5p11 ай бұрын

    please give the website link of bioedit software, bcz there is more than 3-4.

  • @kajalpanchal8239
    @kajalpanchal8239 Жыл бұрын

    Hello sir, does forward mean 5 prime to 3 prime?

  • @DweipayanG

    @DweipayanG

    Жыл бұрын

    Forward mean , the amplicon that u get by extension of forward primer

  • @Zahid.Mumtaz
    @Zahid.Mumtaz3 ай бұрын

    Please guide me, I am stuck as my consensus sequence is coming in this form. what to do? Example >Consensus -------------------------------------------CTGCCAGTAAGACAGGGATAACGCCCGGAAAC-GAAGCAAATAACGCATA--AACCACTCCGCCAGGGGAG-ACGATCGAAAGACGGAAACGCAAAGCAATT---GACGGGCCCCCGCA-CAAGAGCTAGAGCATGAGGTA-AAGGCGAACCAACGCAAAGAACCATACCAGACCTG-GACA-TCATCGGACA-ACT----CT-AGACCAAAAAACAAGGCTCAACCC-GGAGGGTAAGCGGAAACTCGCCAGCCCGAAA-CACCCAGATAATCC-------------------

  • @rupahalder6723
    @rupahalder67235 ай бұрын

    Sir i have some problems to solving Blast. Can i contact with you through mail or contact number ?