DNA Metabarcoding of eDNA/eRNA (Bioinformatics S14E1)
Learn how DNA Metabarcoding is used to protect our environment by providing a cost-efficient method to investigate biodiversity. We go into detail about how eDNA barcoding works, why we do it, and the limitations of the method.
Lectures @ dannyarends.nl/bioinformatik/
Programming Assignments and Answers @ dannyarends.nl/bioinfo/
Playlist: • Bioinformatics for Pla...
Chapters:
0:00 Introduction
1:49 Why DNA Barcoding
5:27 How to DNA barcode
8:35 Which gene to look at?
10:02 Reference databases
11:34 DNA (meta)barcoding
This is a live-stream recording of the MSc and PhD lecture series: Bioinformatics for plant and animal sciences, given digitally during the Covid19 pandemic at the Humboldt University in Berlin organized and lectured by Dr Danny Arends.
Thanks for taking an interest in my channel 😄If you've made it this far down, support me by giving a like or subscribing. Join me during my live streams Thursday afternoons on Twitch @ / dannyarends
This work is licensed under version 3.0 of the Creative Commons CC-BY license. For more information see creativecommons.org/licenses/b...
#bioinformatics #computationalbiology #lectureseries #programmingforstudents #programmingforbeginners #molecularbiology #englishstream #msc #phd #livestream #computers #computerskills #live #assignments #statisticsfordatascience #academia #academicyoutube #eDNA #barcoding #metabarcoding #biodiversity #dna #environmental
Пікірлер: 11
Thanks so much, this bridged a lot of gaps in my understanding.
@DannyArends
5 ай бұрын
That's good to hear, glad I could help.
excellent video!
@DannyArends
3 ай бұрын
Thank you very much!
hey man just wanted to thank yo for your content!
@DannyArends
7 ай бұрын
I appreciate that! Thank you for watching
Great talk!
@DannyArends
2 жыл бұрын
Thanks a lot
Hi! I am interested in DNA metabarcoding datasets for insects, sequenced through an Miseq Illumina in search of the biodiversity monitoring of insects for my bachelor thesis. I will be testing different type of Bioinformatic-tools. But for the moment i can't find Insect-datasets to start with, could you suggest me a free databank? Thanks, great video!
@DannyArends
Жыл бұрын
I would try searching through the sequence read archive (SRA) for data www.ncbi.nlm.nih.gov/sra I would look for any type of data first (not just Miseq) to see what type of data they have available. The SRA is the biggest data set wise, but searching through it is difficult/a bit archaic. Alternatively, you could look for published papers which have data you want, and then see where they uploaded their raw data/use the SRA ids from there. Good luck
@AC-wi7gp
Жыл бұрын
@@DannyArends thank you for replying so fast!