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#molecular_dynamics
Patreon:
patreon.com/NanoRooms
The BTS of the videos are here!
Cited articles
The main paper for this video
Boonserm, P., Somsoros, W., Khunrae, P., Charupanit, K., Limsakul, P., & Sutthibutpong, T. (2024). Allosteric Signal within the Receptor-Binding Domain of the SARS-CoV-2 Spike Protein Mediated by a Class 3 Monoclonal Antibody Revealed through Molecular Dynamics Simulations and Protein Residue Networks. ACS omega, 9(4), 4684-4694.
More on the communicability matrix:
Arrigo, F.; Durastante, F. Mittag-Leffler Functions and their Applications in Network Science. SIAM J. Matrix Anal. Appl. 2021, 42 (4), 1581−1601, DOI: 10.1137/21M1407276.
In depth deep dive into molecular dynamics:
manual.gromacs.org/current/in...
a great PCA explanation video:
• StatQuest: Principal C...
‪@MoBioChem‬ is also a great channel for explaining MD
Molecular Nodes is a 3D animation library created by ‪@BradyJohnston‬
Here’s a link to the repo: github.com/BradyAJohnston/Mol...
big thanks!