SBGrid Consortium

SBGrid Consortium

For structural biologists, by structural biologists!

The SBGrid TV channel was developed with participation from many members of the structural biology community. We welcome suggestions for topics to cover or speakers to hear from in future sessions. Contact us at [email protected].

The project was developed with support from the National Science Foundation.

For more information on SBGrid, please visit us at www.sbgrid.org.

TomoDRGN

TomoDRGN

Amber

Amber

RFdiffusion

RFdiffusion

RELION-5.0

RELION-5.0

OccuPy

OccuPy

DIALS

DIALS

DeepFoldRNA

DeepFoldRNA

DiffDock

DiffDock

Scipion

Scipion

POKY

POKY

careless

careless

OpenFold

OpenFold

ModelAngelo

ModelAngelo

Foldseek

Foldseek

NMR TITAN

NMR TITAN

Proteus

Proteus

TomoTwin-cryoet

TomoTwin-cryoet

PyMOL

PyMOL

CCP4 Cloud Part I

CCP4 Cloud Part I

CCP4 Cloud Part II

CCP4 Cloud Part II

BioXTAS RAW

BioXTAS RAW

RELION-4.0

RELION-4.0

IsoNet

IsoNet

Пікірлер

  • @fruitflylikeabanana
    @fruitflylikeabanana9 ай бұрын

    Really excellent. How do I obtain the 3Di files for my protein and its matches? I think that they would be useful for identifying where matches occur.

  • @riffatsultana1100
    @riffatsultana11009 ай бұрын

    please guide which option is used in new version for strip aliment

  • @MJ-hj8wz
    @MJ-hj8wz10 ай бұрын

    amazing! so quick! thanks!

  • @thejaswinib.g.2570
    @thejaswinib.g.257010 ай бұрын

    Excellent talk❤

  • @eugeniaclerico5008
    @eugeniaclerico500810 ай бұрын

    This is what I have been looking for! Thank you so much.

  • @zairapalominojara5391
    @zairapalominojara539110 ай бұрын

    Thank you very much Dr. Bovin! this is very helpful!

  • @manishdas6525
    @manishdas6525 Жыл бұрын

    Thanks for the explaination.

  • @jimmyyoung1657
    @jimmyyoung16572 жыл бұрын

    Thanks for sharing!

  • @williamnicolas122
    @williamnicolas1222 жыл бұрын

    Nicolas*

  • @castilloh.gianmarco1048
    @castilloh.gianmarco10482 жыл бұрын

    thanks video. classes

  • @MJ-hj8wz
    @MJ-hj8wz2 жыл бұрын

    Very useful! Thanks!

  • @philippebenas5721
    @philippebenas57212 жыл бұрын

    Very interesting! 👍

  • @danirurajapaksha7990
    @danirurajapaksha79903 жыл бұрын

    you are a hero keep up your good work

  • @infomen8128
    @infomen81283 жыл бұрын

    Great tutorial, if you need to see its technical detail, visit us

  • @imrocknreeling
    @imrocknreeling3 жыл бұрын

    Ligands can be macromolecules? I mean large proteins or peptides?

  • @JonaszBP
    @JonaszBP3 жыл бұрын

    Amazing!

  • @debashismajhi386
    @debashismajhi3863 жыл бұрын

    How one can extract data from 3D NMR process spectra?

  • @soheilmahmoudi3015
    @soheilmahmoudi30153 жыл бұрын

    that is great please continue these useful training program.

  • @biomodelos3d995
    @biomodelos3d9953 жыл бұрын

    Absolutely amazing staff! Thankyou! Can LiDAR sensor devices (i-phone, i-pad) be used instead of the special camera? For instance using DroidCam to replace your webcam with your I-phone 12?

  • @CcpNmr
    @CcpNmr3 жыл бұрын

    If you are looking for particular parts of the webinar, timings are as follows: AnalysisAssign demo 14:15 NEF demo 37:48 AnalysisScreen demo 40:45

  • @baisun9088
    @baisun90883 жыл бұрын

    👍👍👍👍👍👍👍👍👍👍👍👍👍👍

  • @offmeds2nite
    @offmeds2nite3 жыл бұрын

    great talk Dan

  • @billyfisher1539
    @billyfisher15393 жыл бұрын

    Wonderful wonderful piece of software... Thank you, Tristan! :)

  • @InfiniteUniverse88
    @InfiniteUniverse883 жыл бұрын

    Is the SARS strain in the 2015 Nature paper (See: www.nature.com/articles/nm.3985 ) the same strain of SARS as Covid-19?

  • @erik_carter_art
    @erik_carter_art3 жыл бұрын

    Can SAXS be used for detergent-solubilized membrane proteins?

  • @quantumbioinc.9533
    @quantumbioinc.95333 жыл бұрын

    Please note: The validation paper for the MovableType fast free energy method is available from JCIM under OpenAccess: pubs.acs.org/doi/10.1021/acs.jcim.0c00618

  • @lipingliao3421
    @lipingliao34213 жыл бұрын

    So exciting

  • @andylau7268
    @andylau72683 жыл бұрын

    Thank you for sharing! These scientific talks should haven been worthy of more attention and applause!

  • @summerxia7474
    @summerxia74743 жыл бұрын

    12:30 ProDy

  • @MJ-hj8wz
    @MJ-hj8wz3 жыл бұрын

    How is the ProSMART added?

  • @PaulEmsley
    @PaulEmsley3 жыл бұрын

    2 months too late, but the menu item it now called "Restraints" and is loaded from Calculate -> Modules. This video is a bit out of date now.

  • @jamilualiyu7565
    @jamilualiyu75654 жыл бұрын

    Thanks you for presented nice session regarding structure based drug design approach, best regards.

  • @NellioStyle
    @NellioStyle3 жыл бұрын

    @Brody Ben Does it helps to dock my girlfriend in a specific receptor too ?

  • @rabeyatafsire9062
    @rabeyatafsire90624 жыл бұрын

    very easy, explanatry and informative. thnx

  • @wujian7791
    @wujian77914 жыл бұрын

    Are there still extensions in Version 9.0 EL? I cannot find these extensions including RCrane.

  • @MrEatteapee
    @MrEatteapee4 жыл бұрын

    Hi Wu, I found the RCrane extension under 'Calculate' second from the bottom. However, I am on 0.8.9.2 EL.

  • @wujian7791
    @wujian77914 жыл бұрын

    Thanks. I think it depends on the versions.@@MrEatteapee

  • @offmeds2nite
    @offmeds2nite4 жыл бұрын

    powerful tool

  • @shilpinagpal1738
    @shilpinagpal17384 жыл бұрын

    Is this like pymol ?

  • @jozeflewandowski7608
    @jozeflewandowski76084 жыл бұрын

    Tom, I love how you keep innovating. The idea with using an ordinary webcam is brilliant. Clearly, it has its limitations but with a bit of creativity it can be very useful. I can't wait to try it for a supporting info of one of my papers!

  • @authorXS
    @authorXS4 жыл бұрын

    r we just gonna ignore corona_cactus and 6u42_guts on Tom's desktop???

  • @authorXS
    @authorXS4 жыл бұрын

    this is cuttin edge here

  • @authorXS
    @authorXS4 жыл бұрын

    5 days ago I left a comment asking for more vids on ChimeraX and then this webinar happens, coincidence?.. Thx Tom Goddard

  • @SBGridTV
    @SBGridTV4 жыл бұрын

    We aim to please! It was, in fact, a coincidence, but we do always welcome suggestions for future topics, so please let us know what software you'd like to hear about.

  • @physicalandquantumchemistr5054
    @physicalandquantumchemistr50544 жыл бұрын

    Great, thanks

  • @michelleottaviano3928
    @michelleottaviano39284 жыл бұрын

    Impressive grace under pressure from our speaker, Evan Worden, who took the fire alarm in stride, donned a mask, relocated, reconnected, and finished his talk. Thanks Evan!

  • @authorXS
    @authorXS4 жыл бұрын

    best

  • @chemobiologist2527
    @chemobiologist25274 жыл бұрын

    Hi Dr. Mahfuz , It was great talk. I was wondering , How affinity reagent works and could you please (if any way you can see my comment) explain how this affinity materials used to purify this protein ?

  • @mahfuzrahman1093
    @mahfuzrahman10934 жыл бұрын

    Hi, can you send me or Ryan (PI) an email for further discussion? Thank you. Mahfuz

  • @mahfuzrahman1093
    @mahfuzrahman10934 жыл бұрын

    You can also find the detail in our recently published article “Rahman et al. 2020 Neuron”. Thank you for your interest.

  • @skatedededo17
    @skatedededo174 жыл бұрын

    Thanks for the video. Can you help me with the software? Because i'm having some difficult to designing a primer and simulating cloning

  • @SBGridTV
    @SBGridTV4 жыл бұрын

    Hi -- for this kind of support, we would suggest contacting Geneious directly or checking the Geneious website where they have a nice selection of tutorials www.geneious.com/tutorials/

  • @nayem1chem
    @nayem1chem4 жыл бұрын

    Would you please upload a basic tutorial for COOT operation and Phenix operation? I am struggling to learn it

  • @ariusmaximilian8291
    @ariusmaximilian82914 жыл бұрын

    THIS SAVED ME THANK YOU!!

  • @piwowarczyk94
    @piwowarczyk944 жыл бұрын

    I would really like to hear that questions… Also, great talk Ellen!

  • @usaassole5739
    @usaassole57394 жыл бұрын

    1

  • @gmx_qk
    @gmx_qk4 жыл бұрын

    How to prepare reference pdb file and whome CA should be choosen....please explain if possible. Thankyou. I'm facein trouble like "It looks like weights used for displacement are zero. Check your reference PDB file"

  • @nayem1chem
    @nayem1chem4 жыл бұрын

    Hi, Thanks for sharing your video. Could you please upload a tutorial for beginner. I recently downloaded in my workstation, but looks like time consuming to discover everything. Please upload tutorial for beginner. Thanks.

  • @PabloConesa
    @PabloConesa4 жыл бұрын

    Hi Rejaul, please check our tutorials page. You'll find pdf tutorials and video tutorial as well. scipion-em.github.io/docs/docs/user/user-documentation.html#tutorials